# Prepare Python environment
import scipy.io as sio
from pathlib import Path
data_dir = Path("../../../data/06-MT-03-MTsat")
data_file = "fig0.mat"
#Load either archived or generated plot variables
mat_contents = sio.loadmat(data_dir / data_file)
## Plot
# Module imports
# PYTHON CODE
# Module imports
import matplotlib.pyplot as plt
import plotly.graph_objs as go
import numpy as np
from plotly import __version__
from plotly.offline import download_plotlyjs, init_notebook_mode, plot, iplot
config={'showLink': False, 'displayModeBar': False}
init_notebook_mode(connected=True)
# Prepare Python environment
tissues = [
"Healthy Cortical GM",
"Healthy WM",
"NAWM",
"Early WM MS Lesion",
"Late WM MS Lesion",
]
protocols = [
"Helms 2008",
"Weiskopf 2013",
"Campbell 2018",
"Karakuzu 2022 Siemens 1",
"Karakuzu 2022 GE 1",
"York 2022",
]
signal_Helms = mat_contents["MTsats"][0]
signal_Weiskopf = mat_contents["MTsats"][1]
signal_Campbell = mat_contents["MTsats"][2]
signal_KarakuzuSiemens = mat_contents["MTsats"][3]
signal_KarakuzuGE = mat_contents["MTsats"][4]
signal_York = mat_contents["MTsats"][5]
# Plot Figure 1
# Module imports
import matplotlib.pyplot as plt
import plotly.graph_objs as go
import numpy as np
from plotly import __version__
from plotly.offline import download_plotlyjs, init_notebook_mode, plot, iplot
config={'showLink': False, 'displayModeBar': False}
init_notebook_mode(connected=True)
# PYTHON CODE
init_notebook_mode(connected=True)
# The polling here is to ensure that plotly.js has already been loaded before
# setting display alignment in order to avoid a race condition.
data_Helms = go.Scatter(
x = tissues,
y = signal_Helms,
name = protocols[0],
text = 'N/A',
hoverinfo = 'y'
)
data_Weiskopf = go.Scatter(
x = tissues,
y = signal_Weiskopf,
name = protocols[1],
hoverinfo = 'y'
)
data_Campbell = go.Scatter(
x = tissues,
y = signal_Campbell,
name = protocols[2],
hoverinfo = 'y'
)
data_KarakuzuSiemens = go.Scatter(
x = tissues,
y = signal_KarakuzuSiemens,
name = protocols[3],
hoverinfo = 'y'
)
data_KarakuzuGE = go.Scatter(
x = tissues,
y = signal_KarakuzuGE,
name = protocols[4],
hoverinfo = 'y'
)
data_York = go.Scatter(
x = tissues,
y = signal_York,
name = protocols[5],
hoverinfo = 'y'
)
data = [data_Helms, data_Weiskopf, data_Campbell, data_KarakuzuSiemens, data_KarakuzuGE, data_York]
layout = go.Layout(
width=750,
height=750,
margin=go.layout.Margin(
l=100,
r=80,
b=100,
t=130,
),
annotations=[
dict(
x=-0.15,
y=0.50,
showarrow=False,
text='MTsat (%)',
font=dict(
family='Times New Roman',
size=22
),
textangle=-90,
xref='paper',
yref='paper'
),
],
xaxis=dict(
showgrid=True,
gridcolor='rgb(169,169,169)',
linecolor='black',
linewidth=2
),
yaxis=dict(
showgrid=True,
gridcolor='rgb(169,169,169)',
linecolor='black',
linewidth=2
),
legend=dict(
x=0.25,
y=1.3,
traceorder='normal',
font=dict(
family='Times New Roman',
size=12,
color='#000'
),
bordercolor='#000000',
borderwidth=2
)
)
fig = dict(data=data, layout=layout)
iplot(fig, filename = 'fig1.html', config = config)
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