# Prepare Python environment
import scipy.io as sio
from pathlib import Path
data_dir = Path("../../../data/04-B1-01-DoubleAngle")
data_file = "da_fig2.mat"
#Load either archived or generated plot variables
mat_contents = sio.loadmat(data_dir / data_file)
nom_first_ang = mat_contents["nom_first_ang"][0][0]
B1 = mat_contents["B1"][0]
TR_range = mat_contents["TR_range"][0]
B1_hard = mat_contents["B1_hard"]
B1_ideal = mat_contents["B1_ideal"]
## Plot
# Module imports
import matplotlib.pyplot as plt
import plotly.graph_objs as go
import numpy as np
from plotly import __version__
from plotly.offline import download_plotlyjs, init_notebook_mode, plot, iplot
config={'showLink': False, 'displayModeBar': False}
init_notebook_mode(connected=True)
# PYTHON CODE
init_notebook_mode(connected=True)
# The polling here is to ensure that plotly.js has already been loaded before
# setting display alignment in order to avoid a race condition.
hard_data = [dict(
visible = False,
x = B1,
y = np.abs(B1_hard[ii,:]),
name = "Refocusing pulse = 180*B1 deg",
line=dict(color="red", width=2),
hoverinfo = "y") for ii in range(len(TR_range))]
hard_data[22]['visible'] = True
ideal_data = [dict(
visible = False,
x = B1,
y = np.abs(B1_ideal[ii,:]),
name = "Refocusing pulse = 180 deg",
line=dict(color="blue", width=2),
hoverinfo = "y") for ii in range(len(TR_range))]
ideal_data[22]['visible'] = True
b1_data = [dict(
visible = False,
x = B1,
y = B1,
name = "B1 identity line",
line=dict(color="black", width=1, dash = 'dash'),
hoverinfo = "y") for ii in range(len(TR_range))]
b1_data[22]['visible'] = True
data = hard_data + ideal_data + b1_data
# Create and add slider
steps = []
for i in range(len(TR_range)):
step = dict(
method="update",
args=[{"visible": [False] * len(b1_data)},], # layout attribute
label = str(TR_range[i])
)
step["args"][0]["visible"][i] = True # Toggle i'th trace to "visible"
steps.append(step)
sliders = [dict(
active=22,
currentvalue={"prefix": "TR (ms) = "},
pad={"t": 50},
steps=steps
)]
layout = go.Layout(
width=600,
height=600,
margin=go.layout.Margin(
l=100,
r=80,
b=100,
t=130,
),
annotations=[
dict(
x=-0.15,
y=0.50,
showarrow=False,
text='Computed B1',
font=dict(
family='Times New Roman',
size=22
),
textangle=-90,
xref='paper',
yref='paper'
),
dict(
x=0.50,
y=-0.15,
showarrow=False,
text='Actual B1',
font=dict(
family='Times New Roman',
size=22
),
textangle=0,
xref='paper',
yref='paper'
),
],
xaxis=dict(
showgrid=True,
gridcolor='rgb(169,169,169)',
linecolor='black',
linewidth=2,
range=[0.7,1.3]
),
yaxis=dict(
showgrid=True,
gridcolor='rgb(169,169,169)',
linecolor='black',
linewidth=2,
range=[0.7,1.3]
),
legend=dict(
x=0.25,
y=1.3,
traceorder='normal',
font=dict(
family='Times New Roman',
size=12,
color='#000'
),
bordercolor='#000000',
borderwidth=2
),
sliders=sliders
)
fig = dict(data=data, layout=layout)
iplot(fig, filename = 'fig2.html', config = config)
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