# Prepare Python environment
import scipy.io as sio
from pathlib import Path
data_dir = Path("../../../data/04-B1-02-AFI")
data_file = "fig2.mat"
#Load either archived or generated plot variables
mat_contents = sio.loadmat(data_dir / data_file)
params = mat_contents["params"]
Nex_range = mat_contents["Nex_range"][0]
signal1_analytical = mat_contents["signal1_analytical"]
signal2_analytical = mat_contents["signal2_analytical"]
signal1_blochsim = mat_contents["signal1_blochsim"]
signal2_blochsim = mat_contents["signal2_blochsim"]
## Plot
# PYTHON CODE
# Module imports
import matplotlib.pyplot as plt
import chart_studio.plotly as py
import plotly.graph_objs as go
import numpy as np
from plotly import __version__
from plotly.offline import download_plotlyjs, init_notebook_mode, plot, iplot
config={'showLink': False, 'displayModeBar': False}
# PYTHON CODE
# PYTHON CODE
init_notebook_mode(connected=True)
data1_1 = [dict(
visible = False,
line=dict(color='royalblue', dash='dash'),
x = params["EXC_FA"][0][0][0],
y = abs(np.squeeze(np.asarray(signal1_analytical[ii]))),
name = 'S<sub>1</sub>: Analytical Solution',
text = 'S<sub>1</sub>: Analytical Solution',
hoverinfo = 'x+y+text') for ii in range(len(Nex_range))]
data1_1[7]['visible'] = True
data1_2 = [dict(
visible = False,
line=dict(color='firebrick', dash='dash'),
x = params["EXC_FA"][0][0][0],
y = abs(np.squeeze(np.asarray(signal2_analytical[ii]))),
name = 'S<sub>2</sub>: Analytical Solution',
text = 'S<sub>2</sub>: Analytical Solution',
hoverinfo = 'x+y+text') for ii in range(len(Nex_range))]
data1_2[7]['visible'] = True
data2_1 = [dict(
visible = False,
line=dict(color='royalblue'),
x = params["EXC_FA"][0][0][0],
y = abs(np.squeeze(np.asarray(signal1_blochsim[ii]))),
name = 'S<sub>1</sub>: Bloch Simulation',
text = 'S<sub>1</sub>: Bloch Simulation',
hoverinfo = 'x+y+text') for ii in range(len(Nex_range))]
data2_1[7]['visible'] = True
data2_2 = [dict(
visible = False,
line=dict(color='firebrick'),
x = params["EXC_FA"][0][0][0],
y = abs(np.squeeze(np.asarray(signal2_blochsim[ii]))),
name = 'S<sub>2</sub>: Bloch Simulation',
text = 'S<sub>2</sub>: Bloch Simulation',
hoverinfo = 'x+y+text') for ii in range(len(Nex_range))]
data2_2[7]['visible'] = True
data = data1_1 + data2_1 + data1_2 + data2_2
steps = []
for i in range(len(Nex_range)):
step = dict(
method = 'restyle',
args = ['visible', [False] * len(data1_1)],
label = str(Nex_range[i])
)
step['args'][1][i] = True # Toggle i'th trace to "visible"
steps.append(step)
sliders = [dict(
x = 0,
y = -0.02,
active = 5,
currentvalue = {"prefix": "n<sup>th</sup> TR1-TR2: <b>"},
pad = {"t": 50, "b": 10},
steps = steps)]
layout = go.Layout(
width=580,
height=450,
margin=go.layout.Margin(
l=80,
r=40,
b=60,
t=10,
),
annotations=[
dict(
x=0.5004254919715793,
y=-0.18,
showarrow=False,
text='Excitation Flip Angle (°)',
font=dict(
family='Times New Roman',
size=22
),
xref='paper',
yref='paper'
),
dict(
x=-0.15,
y=0.5,
showarrow=False,
text='Signal',
font=dict(
family='Times New Roman',
size=22
),
textangle=-90,
xref='paper',
yref='paper'
),
],
xaxis=dict(
autorange=False,
range=[0, params['EXC_FA'][0][0][0][-1]],
showgrid=False,
linecolor='black',
linewidth=2
),
yaxis=dict(
autorange=True,
showgrid=False,
linecolor='black',
linewidth=2
),
legend=dict(
x=0.5,
y=0.9,
traceorder='normal',
font=dict(
family='Times New Roman',
size=12,
color='#000'
),
bordercolor='#000000',
borderwidth=2
),
sliders=sliders
)
fig = dict(data=data, layout=layout)
iplot(fig, filename = 'basic-line', config = config)
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