# Prepare Python environment
import scipy.io as sio
from pathlib import Path
data_dir = Path("../../data/04-B1-03-Filtering")
data_file = "b1filt_fig1.mat"
#Load either archived or generated plot variables
mat_contents = sio.loadmat(data_dir / data_file)
b1_func = mat_contents["b1_func"][0]
gauss_b1_1d = mat_contents["gauss_b1_1d"]
median_b1_1d = mat_contents["median_b1_1d"]
spline_b1_1d = mat_contents["spline_b1_1d"]
vox_range = mat_contents["vox_range"][0]
## Plot
# Module imports
import matplotlib.pyplot as plt
import plotly.graph_objs as go
import numpy as np
from plotly import __version__
from plotly.offline import download_plotlyjs, init_notebook_mode, plot, iplot
config={'showLink': False, 'displayModeBar': False}
init_notebook_mode(connected=True)
# PYTHON CODE
init_notebook_mode(connected=True)
# The polling here is to ensure that plotly.js has already been loaded before
# setting display alignment in order to avoid a race condition.
position = np.arange(1,len(b1_func)+1)
b1_data = [dict(
visible = False,
x = position,
y = b1_func,
name = "True signal",
hoverinfo = "y") for ii in vox_range]
b1_data[5]['visible'] = True
data_gauss = [dict(
visible = False,
x = position,
y = list(gauss_b1_1d[ii-1]),
name = "Gaussian filtered",
hoverinfo = "y") for ii in vox_range]
data_gauss[5]['visible'] = True
data_median = [dict(
visible = False,
x = position,
y = list(median_b1_1d[ii-1]),
name = "Median filtered",
hoverinfo = "y") for ii in vox_range]
data_median[5]['visible'] = 'legendonly'
data_spline = [dict(
visible = False,
x = position,
y = list(spline_b1_1d[ii-1]),
name = "Spline filtered",
hoverinfo = "y") for ii in vox_range]
data_spline[5]['visible'] = 'legendonly'
data = b1_data + data_gauss + data_median + data_spline
# Create and add slider
steps = []
for i in vox_range:
step = dict(
method="update",
args=[{"visible": [False] * len(data_gauss)},], # layout attribute
label = str(i)
)
step["args"][0]["visible"][i-1] = True # Toggle i'th trace to "visible"
steps.append(step)
sliders = [dict(
active=5,
currentvalue={"prefix": "Filter width or spline/polynomial order: "},
pad={"t": 50},
steps=steps
)]
layout = go.Layout(
width=750,
height=750,
margin=go.layout.Margin(
l=100,
r=80,
b=100,
t=130,
),
annotations=[
dict(
x=-0.15,
y=0.50,
showarrow=False,
text='Signal',
font=dict(
family='Times New Roman',
size=22
),
textangle=-90,
xref='paper',
yref='paper'
),
],
xaxis=dict(
showgrid=True,
gridcolor='rgb(169,169,169)',
linecolor='black',
linewidth=2
),
yaxis=dict(
showgrid=True,
gridcolor='rgb(169,169,169)',
linecolor='black',
linewidth=2
),
legend=dict(
x=0.25,
y=1.3,
traceorder='normal',
font=dict(
family='Times New Roman',
size=12,
color='#000'
),
bordercolor='#000000',
borderwidth=2
),
sliders=sliders
)
fig = dict(data=data, layout=layout)
iplot(fig, filename = 'fig1.html', config = config)
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