qMRLab

Quantitative MRI. Under one umbrella.

B1+
B0
DTI
DTI
IR-T1
DTI
MTsat
MWF
qMT
VFA-T1
QSM
CHARMED
MTR
qMT
NODDI

Welcome to qMRLab

qMRLab is a MATLAB/Octave open-source software for quantitative MR image analysis.

The main goal of the qMRLab project is to provide the community with software that makes data fitting, simulation and protocol optimization as easy as possible for a myriad of different quantitative models.

We are working hard to sustain a scalable codebase and to encourage everyone to contribute their favorite recipe for qMR.

Simulate

Explore qMRI methods with the simulation tools.

Generate syntetic data to evaluate how models perform with a given set of parameters. Determine the acquisition protocol that works best for your application. Evaluate how fitting constraints impact the results.

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Fit

Create your quantitative maps via GUI (graphical user interface) or CLI (command-line interface).

Intuitively designed interfaces allow you to seamlessly import real-world qMR data, set acquisition parameters and customize fitting options. You can save your fitting session and share it with others to reproduce outputs.

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Visualize

The GUI provides sanity checks and tools for inspecting the results.

Navigate through the quantitative maps using the embedded volume viewer and check the data fits for selected voxels. Get statistics for the regions that you would like to inspect.

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Contributors

Agah Karakuzu

Mathieau Boudreau

Tanguy Duval

Ilana Leppert

Tommy Boshkovski

Bruce Pike

Julien Cohen-Adad

Nikola Stikov

Affiliations